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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16236097_16240480_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16236097 - 16240480
Intron Length:
4384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TATTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGTTGTCAATT
Flanking Amino Acid:
MHLSKAHRMQDGKFNAPIRK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
90.4
0.91
0.7
88.7
27.9
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
50.7
0.1
2.2
75.27
42.3

Associated Gene:

Gene:
ATMIN
Ensembl Gene ID:
ENSAPLG00000009633
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010029
16235863 - 16244463
8601