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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16240607_16241480_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16240607 - 16241480
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCTTTTCATT
Flanking Amino Acid:
PFSQFSLVKQHFMKMHAEKK
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.59
0.9
70.9
39.4
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
52.8
0.17
1.7
72.08
39.9

Associated Gene:

Gene:
ATMIN
Ensembl Gene ID:
ENSAPLG00000009633
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010029
16235863 - 16244463
8601