Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16256846_16256890_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16256846 - 16256890

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAAACCT

5'SS Class:

major

3'SS Sequence:

GACATGGTGCAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAGACAT

U12 Branch Point Sequence:

TTTGCTTAGACA

Flanking Amino Acid:

LQKQIKKSKATTDKCSGQEV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.4

0.39

61.2

37.3

Major BPS

59.8

0.24

1.2

39.8

Major PPT

46.2

-0.2

1.2

36.8

Minor 5ss

30.2

-2.3

3.2

40.5

39.3

Minor BPS

58.8

0.27

1.8

73.66

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026651

16255926 - 16257483

1558