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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16256964_16257360_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16256964 - 16257360
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTCTATTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTCTTAAATT
Flanking Amino Acid:
RAPGCGWEEAVQGWGSTNPL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
75.2
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.1
0.61
0.9
70.5
39
Minor 5ss
42.6
-0.8
3
62.8
42
Minor BPS
68.6
0.66
1.6
83.09
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027134
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026651
16255926 - 16257483
1558