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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16276078_16276652_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16276078 - 16276652
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTAACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
GLVNKSCYQDGWLIKMTVEN
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.7
0.51
0.8
66.8
33.1
Minor 5ss
39.8
-1.1
3.1
53.4
45.6
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021043
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023755
16275980 - 16283308
7329