Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16278409_16279633_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16278409 - 16279633

Intron Length:

1225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCGATC

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTGAT

U12 Branch Point Sequence:

TTTTCTTTTAAG

Flanking Amino Acid:

GTVGISNFAQEALGDVVYCS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.2

69.5

41.1

Major BPS

71.5

0.53

1.1

43.2

Major PPT

85.6

0.8

0.9

91.1

21.3

Minor 5ss

48.5

-0.1

2.9

68.8

42.2

Minor BPS

62.7

0.26

1.8

72.54

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023755

16275980 - 16283308

7329