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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16322139_16322180_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16322139 - 16322180
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
GAAACTGTACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTCTTTGAAA
Flanking Amino Acid:
SNSLLNETTDACDNAKYQWG
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.7
38.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
53.9
0.09
1.1
44
46
Minor 5ss
33.4
-1.9
3.6
48.8
47.3
Minor BPS
69
0.59
1.4
75.09
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016688
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042915
16321433 - 16327234
5802