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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16334658_16334945_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16334658 - 16334945
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGACCTTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
CCTGTCTGACCT
Flanking Amino Acid:
ALLHSFTFKNGEVYYRSKYL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
68
0.45
1
57.8
39
Major PPT
70
0.45
1
69.2
41.5
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
47.4
-0.1
1.9
63.41
47.1

Associated Gene:

Gene:
BCO1
Ensembl Gene ID:
ENSAPLG00000010038
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010477
16330872 - 16345156
14285