About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16335076_16336552_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16335076 - 16336552
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATGAACC
Flanking Amino Acid:
YPDPCKNIFAKAFSYLSHTI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.6
0.8
0.7
80.7
24.5
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
49.4
-0
1.9
64.37
40.4

Associated Gene:

Gene:
BCO1
Ensembl Gene ID:
ENSAPLG00000010038
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010477
16330872 - 16345156
14285