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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16336701_16337558_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16336701 - 16337558
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
TATCATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CATCTCTAAAAT
Flanking Amino Acid:
NPQTLETLEKVDYNKYIAVN
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.1
0.72
0.9
73.3
41.3
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
49.9
0.08
1.8
67.41
43.1

Associated Gene:

Gene:
BCO1
Ensembl Gene ID:
ENSAPLG00000010038
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010477
16330872 - 16345156
14285