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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16339006_16339852_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16339006 - 16339852
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGGTTTTAAAT
Flanking Amino Acid:
SCLAFHKDDKTWFHFVDRKT
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.5
0.62
0.9
73.3
37.2
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
57.7
0.32
1.5
70.57
40.8

Associated Gene:

Gene:
BCO1
Ensembl Gene ID:
ENSAPLG00000010038
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010477
16330872 - 16345156
14285