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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16341354_16341982_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16341354 - 16341982
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTCCTAAGT
Flanking Amino Acid:
IYCQPEILCEGIELPHINYG
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.7
0.44
0.9
63.4
42.3
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
58.5
0.34
2
79.96
42.2

Associated Gene:

Gene:
BCO1
Ensembl Gene ID:
ENSAPLG00000010038
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010477
16330872 - 16345156
14285