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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16349777_16362056_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16349777 - 16362056
Intron Length:
12280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGATT
Flanking Amino Acid:
NILAAASPYIRTKLNYNPPK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68
43.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.8
0.56
0.7
72.9
25.3
Minor 5ss
34.2
-1.8
3.6
50.1
46.4
Minor BPS
63.9
0.52
1.6
80.56
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010781
16349610 - 16375421
25812