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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16364465_16365360_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16364465 - 16365360
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
ACCTTGTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGTTCCTCACCT
Flanking Amino Acid:
CIVTVGGEERVSRKPTSVMR
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.4
37.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.5
0.48
1
68.7
41.5
Minor 5ss
40.4
-1.1
2.8
53.8
42.8
Minor BPS
65.9
0.58
1.9
85.32
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010781
16349610 - 16375421
25812