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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16365483_16365965_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16365483 - 16365965
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
PRINHGVLSAEGFLFVLGGQ
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010781
16349610 - 16375421
25812