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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16366079_16367118_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16366079 - 16367118
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTGACTTTATTC
Flanking Amino Acid:
SWSSLPPMNEARHNFGVVEI
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
76.1
38.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
78.5
0.64
0.7
77.5
30.9
Minor 5ss
34.8
-1.7
4
50.9
45.8
Minor BPS
57.6
0.22
1.6
66.51
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010781
16349610 - 16375421
25812