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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16367708_16368389_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16367708 - 16368389
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
WTAICPLKERRFGAVACGVA
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
79.3
31.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.5
0.69
0.9
73.8
40.8
Minor 5ss
28.2
-2.5
2.8
32.2
42.5
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010781
16349610 - 16375421
25812