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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16368519_16374376_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16368519 - 16374376
Intron Length:
5858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
KSEFYHDEFKRWIYLNDQNL
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010354
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010781
16349610 - 16375421
25812