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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16410316_16478686_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16410316 - 16478686
Intron Length:
68371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
AAGTAAACATTT
Flanking Amino Acid:
LADTGVASATPTGYMENSIS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.4
36.8
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
34.6
-1.8
2.8
40.9
45.3
Minor BPS
34.2
-1.1
1.9
47.49
38.1

Associated Gene:

Gene:
CMIP
Ensembl Gene ID:
ENSAPLG00000010524
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011005
16410001 - 16535506
125506