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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16504663_16505818_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16504663 - 16505818
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTGACTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTCTGTTTGACT
Flanking Amino Acid:
LEIVSKLLSENNNLTTQDHE
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.3
33.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
79.7
0.67
0.9
73.5
36.8
Minor 5ss
45.3
-0.5
2.7
60.2
44.5
Minor BPS
65
0.55
1.8
82.51
39.6

Associated Gene:

Gene:
CMIP
Ensembl Gene ID:
ENSAPLG00000010524
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011005
16410001 - 16535506
125506