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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16505861_16508353_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16505861 - 16508353
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
TTQDHESIIVAIAPLLENNH
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.3
0.61
1
78.2
33.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
CMIP
Ensembl Gene ID:
ENSAPLG00000010524
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011005
16410001 - 16535506
125506