Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16512403_16512955_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16512403 - 16512955

Intron Length:

553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTTAC

5'SS Class:

major

3'SS Sequence:

TTTTGTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

ATTGCAGTGACG

Flanking Amino Acid:

GMEVVKKFIHSMHGPTGQCP

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.2

70.5

36.5

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

93.6

0.98

0.7

92.3

26.6

Minor 5ss

35.5

-1.7

2.9

43.7

44.1

Minor BPS

44.9

-0.5

2.4

57.86

43.8

Associated Gene:

Gene:

CMIP

Ensembl Gene ID:

ENSAPLG00000010524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011005

16410001 - 16535506

125506