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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16523029_16523504_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16523029 - 16523504
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
KEALAHEKFTKELKYVIQRF
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
CMIP
Ensembl Gene ID:
ENSAPLG00000010524
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011005
16410001 - 16535506
125506