Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16523554_16525037_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16523554 - 16525037

Intron Length:

1484

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTTGGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAA

U12 Branch Point Sequence:

GAAACTGTAACC

Flanking Amino Acid:

QRFAEDPRQEVHSCLLSVRA

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.5

27.6

Major BPS

63.1

0.33

1.2

72.7

34.3

Major PPT

81.8

0.72

0.9

79.9

32.1

Minor 5ss

36.7

-1.5

2.8

41.8

38.8

Minor BPS

48.4

-0.1

58.09

40.2

Associated Gene:

Gene:

CMIP

Ensembl Gene ID:

ENSAPLG00000010524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011005

16410001 - 16535506

125506