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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16528536_16529489_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16528536 - 16529489
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
ACCTCTTTGACC
Flanking Amino Acid:
CDRQRELKELQRKGGPTRLT
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.7
38.7
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
40.7
-1
2.8
49.5
41.3
Minor BPS
67.6
0.54
1.2
67.29
39

Associated Gene:

Gene:
CMIP
Ensembl Gene ID:
ENSAPLG00000010524
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011005
16410001 - 16535506
125506