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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16529538_16530315_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16529538 - 16530315
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TCTTGCTTATCA
Flanking Amino Acid:
TRLTLPSKSTDADLARLLSS
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
79
0.72
1
80.3
31.7
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
60.9
0.34
2.1
74.85
43.1

Associated Gene:

Gene:
CMIP
Ensembl Gene ID:
ENSAPLG00000010524
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011005
16410001 - 16535506
125506