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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16594230_16595012_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16594230 - 16595012
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATTACC
5'SS Class:
major
3'SS Sequence:
CTTTCTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GAATTCTAAATT
Flanking Amino Acid:
MKFLKDKFAEIGAHKEELS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72
37.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.3
0.73
0.7
77.9
29.2
Minor 5ss
37.6
-1.4
2.7
48.2
40.3
Minor BPS
58.1
0.33
1.6
70.34
40.7

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332