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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16596520_16597694_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16596520 - 16597694
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TTATTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTTTTTAAAG
Flanking Amino Acid:
FKKDSSVFILGNTDRPDASA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.5
0.69
1
82.4
32.9
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
67.6
0.41
1.4
69.32
37.9

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332