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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16598982_16599154_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16598982 - 16599154
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
CTTTGCATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAACATTTAAAT
Flanking Amino Acid:
TAEPFLFVDEFLTYLFAKEN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.3
0.61
0.8
74.5
35
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
50.5
0.09
1.6
64.93
38.4

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332