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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16599274_16600558_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16599274 - 16600558
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
SHYWISSSHNTYLTGDQLRS
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84
30.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.6
0.66
0.7
78.4
30
Minor 5ss
43.2
-0.7
2.9
57.4
40.7
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332