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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16605765_16606817_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16605765 - 16606817
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGGCT
5'SS Class:
major
3'SS Sequence:
TTTTCTGGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AAATTCTTATTT
Flanking Amino Acid:
EQNADEDSSKEVKRTDLHLK
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.4
36.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.9
0.58
1
69.7
41.5
Minor 5ss
26.5
-2.7
3.5
39
46.3
Minor BPS
60.4
0.41
1.5
72.1
38.9

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332