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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_166066_173061_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
166066 - 173061
Intron Length:
6996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAGGA
5'SS Class:
major
3'SS Sequence:
AACATTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GACTTATCAACA
Flanking Amino Acid:
PDTVELMNWIKSNTPNTAVF
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
36.3
Major BPS
79
0.72
1
80.3
31.7
Major PPT
64.7
0.33
1
62.3
43.4
Minor 5ss
31.5
-2.1
3.4
38.5
40.9
Minor BPS
48.8
-0.1
1.8
58.69
40.4

Associated Gene:

Gene:
DPY19L3
Ensembl Gene ID:
ENSAPLG00000012920
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031327
162016 - 195127
33112
ENSAPLT00000024410
163632 - 195127
31496
ENSAPLT00000013474
162016 - 195127
33112
ENSAPLT00000032210
156791 - 195127
38337