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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16606997_16607744_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16606997 - 16607744
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
TTCACATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTCCTTATCC
Flanking Amino Acid:
AFPNDCTLSFWRSGRVQHCR
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
77.6
0.62
0.9
74.1
35.5
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
82.4
1
1.4
90.52
30.4

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332