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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16607946_16609449_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16607946 - 16609449
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TTGACTGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTTTTGACT
Flanking Amino Acid:
VPNPSPHENKDWYYSNLSRG
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
65.5
40.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.3
0.48
1
65.8
40.8
Minor 5ss
36.2
-1.6
2.9
39.6
39.8
Minor BPS
70
0.71
1.1
79.87
36

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332