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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16609570_16610512_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16609570 - 16610512
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCAAT
U12 Branch Point Sequence:
ATATCTTCTACA
Flanking Amino Acid:
DEPDSFAMTFRAEGKVKHFR
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
64.1
0.35
1.2
71
33.2
Major PPT
78.2
0.63
0.9
72
37.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
52.7
0.08
1.8
66.86
39.6

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332