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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16610694_16611334_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16610694 - 16611334
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTTTTCCCATTT
Flanking Amino Acid:
TEELLERYSTEKDINSLYDV
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
79.4
0.66
0.8
77.5
30
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
48.6
-0
2.1
76.5
40.5

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332