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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16611404_16612435_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16611404 - 16612435
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCTTA
5'SS Class:
weak_major
3'SS Sequence:
GCTTCTCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
CTTCTCTTAAAG
Flanking Amino Acid:
VEPSEINPTVPQRTVKALYD
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
69.4
37.6
Major BPS
71.4
0.53
1
67
39.8
Major PPT
71.2
0.48
1
70.7
33.9
Minor 5ss
62.8
0.43
2.3
69.7
43.2
Minor BPS
63.4
0.28
1.5
65.72
41.9

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332