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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16612546_16613324_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16612546 - 16613324
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
IHNVTKETGGWWKGDYGEKV
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.7
0.44
1
68.2
41.9
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332