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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16613422_16614350_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16613422 - 16614350
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCAGATTTAACT
Flanking Amino Acid:
SDNSAELESQIIEDNPLGSL
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
81.3
0.7
0.9
76.3
37.2
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
60.1
0.4
1.6
73.34
43.6

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332