About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16614418_16614684_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16614418 - 16614684
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAC
U12 Branch Point Sequence:
TGTTGCTTAACA
Flanking Amino Acid:
GILVLNTYNVVKMPQGKHKK
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
64.6
0.36
1
71.3
30.4
Major PPT
75
0.56
1
69.8
40.4
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
75.6
0.8
1.7
84.27
35.8

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332