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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16614843_16617241_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16614843 - 16617241
Intron Length:
2399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
TTAAATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTGTCTGTAATC
Flanking Amino Acid:
REITWKTAEEENRRKYWEKN
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
77.1
37.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
79.4
0.66
0.9
72.7
41.7
Minor 5ss
44.4
-0.6
3.2
66.1
45.1
Minor BPS
60.9
0.32
2
73.46
38.5

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332