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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16617345_16618567_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16617345 - 16618567
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
CTCGCTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATGTAATGACT
Flanking Amino Acid:
KPTSKTKDNLENPDFKEIRS
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.3
0.55
0.8
69.1
31.5
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
45.2
-0.3
1.9
64.04
39.9

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332