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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16618778_16619368_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16618778 - 16619368
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GACTGTTTAACT
Flanking Amino Acid:
QMVALNFQTPDKYMQLNHAL
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.4
0.46
0.8
62.4
34
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
61.1
0.43
1.8
73.5
43.4

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332