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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16620598_16621939_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16620598 - 16621939
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACAG
Flanking Amino Acid:
DNNKFKTTVVNDNGLNPVWA
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
75
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
86.7
0.82
0.7
80.9
29.6
Minor 5ss
36.1
-1.6
2.8
42.3
38.4
Minor BPS
55.7
0.04
2.1
70.06
42.7

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332