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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16622108_16622971_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16622108 - 16622971
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAT
U12 Branch Point Sequence:
TTGTTTTCCACA
Flanking Amino Acid:
ATFPIKGIKTGFRSVPLKNG
Intron Amino Acid Position:
982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
56.3
0.16
1.5
57.4
49.1
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
49.3
-0
1.9
66.45
40.7

Associated Gene:

Gene:
PLCG2
Ensembl Gene ID:
ENSAPLG00000010652
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011198
16594203 - 16627534
33332