Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16626669_16627491_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16626669 - 16627491

Intron Length:

823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTGA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCCCTTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTT

Flanking Amino Acid:

LQIYQETCNRRLKEKKVSNS

Intron Amino Acid Position:

1073

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

38.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.54

77.3

31.2

Minor 5ss

38.2

-1.3

3.1

49.4

46.8

Minor BPS

70.5

0.72

1.5

86.8

33.5

Associated Gene:

Gene:

PLCG2

Ensembl Gene ID:

ENSAPLG00000010652

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011198

16594203 - 16627534

33332