Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16634641_16635206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16634641 - 16635206

Intron Length:

566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTTAGTGCA

5'SS Class:

major

3'SS Sequence:

CGTCCTGTTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAC

U12 Branch Point Sequence:

ATGTATATAACA

Flanking Amino Acid:

ITGGGGYFGFRLGCAIYQMG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.2

67.5

37.8

Major BPS

69.1

0.48

32.1

Major PPT

71.9

0.49

0.9

Minor 5ss

29.8

-2.3

2.9

35.4

40.6

Minor BPS

54.2

0.13

1.8

67.74

38.4

Associated Gene:

Gene:

SDR42E1

Ensembl Gene ID:

ENSAPLG00000001581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001623

16633536 - 16635274

1739