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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16658445_16658747_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16658445 - 16658747
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAAGGAA
5'SS Class:
weak_major
3'SS Sequence:
TTAATGAAGCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACCTTAATG
Flanking Amino Acid:
LQLDITNPTQYPVITAMCVL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.5
0.13
1.3
56.3
36.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
51.7
0.04
1.1
45
45.6
Minor 5ss
25
-2.9
3.4
28.7
37.6
Minor BPS
74.5
0.63
1.3
73.31
39.1

Associated Gene:

Gene:
HSD17B2
Ensembl Gene ID:
ENSAPLG00000001835
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001835
16653733 - 16662600
8868