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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16661197_16661489_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16661197 - 16661489
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGTT
5'SS Class:
major
3'SS Sequence:
ACCTTTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTGCTCTGAACC
Flanking Amino Acid:
AAIQPSGFRTESVHVRLLVE
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.3
37.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
77.9
0.63
0.8
73.4
30.9
Minor 5ss
33.6
-1.9
3.5
49.5
46.8
Minor BPS
64.9
0.45
1.4
72.55
38.2

Associated Gene:

Gene:
HSD17B2
Ensembl Gene ID:
ENSAPLG00000001835
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001835
16653733 - 16662600
8868