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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1670160_1670248_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1670160 - 1670248
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
CCTTAATTCAGG
Flanking Amino Acid:
SSSELMQKVSGYEWCEIEEC
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
85.3
0.8
0.8
76.9
37.3
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
39.5
-0.9
2.3
44.75
47.1

Associated Gene:

Gene:
CCNE1
Ensembl Gene ID:
ENSAPLG00000013739
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014348
1668737 - 1680467
11731